BioWave,  Vol. 25 No. 3
한림대학교 생명과학과 Microbiome Homeostasis Lab 김봉수 교수
연구실 홈페이지
Introduction  
 

 본 연구실에서는 미생물들의 상호 작용과 호스트 및 서식처와의 상호작용을 실험과 생물정보학적 기법을 이용하여 분석하고 공부하여 마이크로바이옴을 활용한 새로운 질병 치료, 예방, 환경 생태계 유지 복원을 위한 마이크로바이옴 활용 방법 연구를 수행하고 있습니다. 시료에서 DNA, RNA를 추출하여 NGS (Next Generation Sequencing) library구축, NGS 운영, NGS data 분석을 직접 수행하여 마이크로바이옴 메타게놈 (Metagenome), 메타전사체 (Metatranscriptome) 연구를 수행하고 있으며, 유용 미생물의 분리 동정 (Isolation and classification), 분리한 미생물의 전장 유전체 (Whole genome) 분석을 실험실에서 직접 수행하고 있습니다. 또한, 마이크로바이옴 연구를 통해 세운 가설을 검증하기 위한 새로운 모사 시스템 (Mimicking system)을 개발하여 미생물 상호 작용 (Microbe-Microbe Interaction)과 미생물-숙주 상호작용 (Microbe-Host Interaction)을 기초 과학적, 응용 과학적 연구를 수행하고 있습니다.

   Bong-Soo Kim, Ph.D.
   2020-현재 한림대학교 생명과학과 부교수

   2020-2022 한림대학교 특훈교원
   2022-현재 한림대학교 바이오헬스케어소재 ICC 센터장
   2014-2020 한림대학교 생명과학과 조교수
   2011-2014 (주) 천랩 생물정보연구소 연구소장
   2008-2011 미국 FDA 독성학연구소 박사후연구원
   2007-2008 서울대학교 미생물연구소 박사후연구원
   2001 - 2007 서울대학교 생명과학부 (미생물학 전공) 박사
   1997 - 2001 서울대학교 응용생물화학부 학사  
 
Research  
 

 Research Topics

 
Publications  
 

최근 3년, 2020~2022

Imchang Lee, Olga Podolich, Bertram Brenig, Sandeep Tiwari, Vasco Azevedo, Daniel Santana de Carvalho, Ana Paula Trovatti Uetanabaro, Aristoteles Goes-Neto, Khalid J. Alzahrani, Oleg Reva, Natalia Kozyrovska, Jean-Pierre de Vera, Debmalya Barh, Bong-Soo Kim*. (2022) Metagenome-assembled genomes of Komagataeibacter from Kombucha exposed to Mars-like conditions reveal the secrets in tolerating extraterrestrial stresses. Journal of Microbiology and Biotechnology. (in press).

Min-Jung Lee, Yoon Mee Park, Byunghyun Kim, In Hwan Tae, Nam-Eun Kim, Marina Pranata, Taewon Kim, Sungho Won, Nam Joo Kang, Yun Kyung Lee, Dong-Woo Lee, Myung Hee Nam, Soo-Jong Hong, Bong-Soo Kim*. (2022) Disordered development of gut microbiome interferes with the establishment of the gut ecosystem during early childhood with atopic dermatitis. Gut Microbes. 14(1), e2068366.

Jeong-Hyun Kim, Seung-Hwa Lee, Mi-Jin Kang, Yoon Mee Park, Bong-Soo Kim, So-Yeon Lee, Shin Ah Kim, Sun-Goo Hwang, Min Jee Park, Kun Baek Song, Eom Ji Choi, Sungsu Jung, Soo-Jong Hong. (2022) Host-microbial interactions between PTGR2 and Bifidobacterium in the early life gut of atopic dermatitis children. Pediatric Allergy and Immunology. 33, e13724.

Ji-Young Lee, Hyeon-Su Jin, Kyoung Su Kim, Je-Hyun Baek, Bong-Soo Kim, Dong-Woo Lee. (2022) Nutrient-specific proteomic analysis of the mucin degrading bacteria Akkermansia muciniphila. Proteomics. 22(3), e2100125.

Ziyuan Jiang, Jiajin Li, Nahyun Kong, Jeong-Hyun Kim, Bong-Soo Kim, Min-Jung Lee, Yoon Mee Park, So-Yeon Lee, Soo-Jong Hong, Jae Hoon Sul. (2022) Accurate diagnosis of atopic dermatitis by combining transcriptome and microbiota data with supervised machine learning. Scientific Reports. 12, 290.

Hyo-Eun Kim, Jongjin Kim, Sejung Maeng, Bumjo Oh, Ki-Tae Hwang, Bong-Soo Kim*. (2021) Microbiota of breast tissue and its potential association with regional recurrence of breast cancer in Korean women. Journal of Microbiology and Biotechnology. 31, 1643-1655.

David Broderick, David W Waite, Robyn Marsh, Carlos A Camargo, Paul Cardenas, Anne B Chang, William Osmond Charles Cookson, Leah Cuthbertson, Wenkui Dai, Mark Lloyd Everard, Alain Gervaix, J Kirk Harris, Kohei Hasegawa, Lucas R Hoffman, Soo-Jong Hong, Laurence Josset, Matthew S Kelly, Bong-Soo Kim, Yong Kong, Shuai Cheng Li, Jonathan Mansbach, Asuncion Mejias, George A O'toole, Laura Paalanen, Marcos Perez Losada, Melinda M Pettigrew, Maxime Pichon, Octavio Ramilo, Lasse Ruokolainen, Olga Sakwinska, Patrick Seed, Christopher J Van Der Gast, Brandie Wagner, Hana Yi, Edith T Zemanick, Yuejie Zheng, Naveen Pillarisetti, Mike Taylor. (2021) Bacterial signatures of paediatric respiratory disease: an individual participant data meta-analysis. Frontiers in Microbiology. 12, 711134.

Purevsuren Losol, Sae-Hoon Kim, Soyeon Ahn, Sejoon Lee, Jun-Pyo Choi, Yong-Hyun Kim, Soo-Jong Hong, Bong-Soo Kim, Yoon-Seok Chang. (2021) Genetic variation in the TLR-related pathway and smoking exposure alter the upper airway microbiota in adult asthmatic patients. Allergy. 76(10); 3217-3220.

Imchang Lee, Debmalya Barh, Olga Podolich, Bertram Brenig, Sandeep Tiwari, Vasco Azevedo, Aristoteles Goes-Neto, Oleg Reva, Natalia Kozyrovska, Jean-Pierre de Vera, Bong-Soo Kim*. (2021) Metagenome-assembled genome sequences obtained from reactivated kombucha microbial community exposed to Mars-like environment outside the international space station. Microbiology Resource Announcements. 10, e00549-21.

Jaehyun Park, Sharon M. Lutz, Seungil Choi, Sanghun Lee, Sangcheol Park, Kangjin Kim, Hosik Choi, Hansoo Park, So-Yeon Lee, Scott T. Weiss, Soo-Jong Hong, Bong-Soo Kim*, Sungho Won*. (2021) Multi-omics analyses implicate EARS2 in the pathogenesis of atopic dermatitis. Allergy. 76(8); 2602-2604.

Mi-Jin Kang, So-Yeon Lee, Yoon-Mee Park, Bong-Soo Kim, Min-Jung Lee, Jeong-Hyun Kim, Seonmi Jeong, Seung-Hwa Lee, Min Jee Park, Eun-Sang Rhee, Sungsu Jung, Jisun Yoon, Hyun-Ju Cho, Eun Lee, Song-I Yang, Dong In Suh, Kyung Won Kim, Youn Ho Sheen, Kangmo Ahn, Soo-Jong Hong. (2021) Interaction between IL-17 variants and Streptococcus in the gut contribute to the development of atopic dermatitis in infancy. Allergy Asthma & Immunology Research. 13, 404-419.

Jin-Jae Lee, Dongeun Yong, Ki Tae Suk, Dong Joon Kim, Heung-Jeong Woo, Seung Soon Lee*, Bong-Soo Kim*. (2021) Alteration of gut microbiota in carbapenem-resistant Enterobacteriaceae carriers during fecal microbiota transplantation according to decolonization periods. Microorganisms. 9, 352.

Ji Taek Hong, Min-Jung Lee, Sang Jun Yoon, Seok Pyo Shin, Chang Seok Bang, Gwang Ho Baik, Dong Joon Kim, Gi Soo Yoon, Min Jae Shin, Young Lim Ham, Ki Tae Suk*, Bong-Soo Kim*. (2021) Effect of Korean red ginseng on nonalcoholic fatty liver disease: an association of gut microbiota with liver function. Journal of Ginseng Research. 45, 316-324.

Ji Eun Kim, Hyo-Eun Kim, Hyunjeong Cho, Ji In Park, Min-Jung Kwak, Byung-Yong Kim, Seung Hee Yang, Jung Pyo Lee, Dong Ki Kim, Kwon Wook Joo, Yon Su Kim, Bong-Soo Kim, Hajeong Lee. (2020) Effect of the similarity of gut microbiota composition between donor and recipient on graft function after living donor kidney transplantation. Scientific Reports. 10, 18881.

Ji In Park, Tae-Yoon Kim, Bumjo Oh, Hyunjeong Cho, Ji Eun Kim, Seong Ho Yoo, Jung Pyo Lee, Yon Su, Kim, Jongsik Chun, Bong-Soo Kim*, Hajeong Lee*. (2020) Comparative analysis of the tonsillar microbiota in IgA nephropathy and other glomerular diseases. Scientific Reports. 10, 16206.

Bo Kyoung Hwang, HeyLim Choi, Sang Ho Choi*, Bong-Soo Kim*. (2020) Analysis of microbiota structure and potential functions influencing spoilage of fresh beef meat. Frontiers in Microbiology. 11, 1657.

Ji Eun Kim, Hyo-Eun Kim, Ji In Park, Hyunjeong Cho, Min-Jung Kwak, Byung-Yong Kim, Seung Gee Yang, Jung Pyo Lee, Dong Ki Kim, Kwon Wook Joo, Yon Su Kim, Bong-Soo Kim*, Hajeong Lee*. (2020) The association between gut microbiota and uremia of chronic kidney disease. Microorganisms. 8, 907.

HyeLim Choi, Bo Kyoung Hwang, Bong-Soo Kim*, Sang Ho Choi*. (2020) Influence of pathogen contamination on beef microbiota under different storage temperature. Food Research International. 132, 109-118.

Yoon Mee Park, So-Yeon Lee, Mi-Jin Kang, Bong-Soo Kim, Min-Jung Lee, Sung Su Jung, Ji Sun Yoon, Hyun-Ju Cho, Eun Lee, Song-I Yang, Ju-Hee Seo, Hyo-Bin Kim, Dong In Suh, Youn Ho Shin, Kyung Won Kim, Kangmo Ahn, Soo-Jong Hong. (2020) Imbalance of gut Streptococcus, Clostridium, and Akkermansia determines the natural course of atopic dermatitis in infant. Allergy Asthma & Immunology Research. 12(2); 322-337.

*; Corresponding author

 

 
     
 
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 지도교수: 김봉수 교수

   (2022년 현재)
 박사후 연구원 : 이임창 박사
 박사과정 : 이민정, 이진재
 석사과정 : 장설아, 김민영, 조재원, 박준영, 최정화, 안유정
 Contact :
bkim79@hallym.ac.kr , Lab: 033-248-2093
 Homepage: https://sites.google.com/view/eco-microbiome-lab/

 
     
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